rs610282 chr1:201505416 C>G
- Sequence
gaaggcaggtgctaagacagacca[C/G]aggcaaataggccacagcacccct
- ASB in cell types
- keratinocytes MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- SNAI2_HUMAN ZFX_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | n/a | 2.92 | 1.33 | n/a | No Hit | |||
| ZFX_HUMAN | -0.76 | 1.92 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Nerve_Tibial, Pancreas, Spleen, Stomach, Uterus, Whole_Blood