rs610591 chr7:129502934 G>A
- Sequence
aggtcaccgcctctccctggggtc[G/A]acctcaacgcgtggcgaaaagatg
- ASB in cell types
- foreskin keratinocyte LNCaP (prostate carcinoma) LNCaP C4-2B (prostate carcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.81 | 1.65 | 1.87 | -0.06 | Weak Discordant | |||
| IKZF1_HUMAN | 1.61 | -1.49 | 1.33 | n/a | No Hit |
Items per page:
1 – 2 of 2
Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid