rs6116673 chr20:5169221 G>A
- Sequence
ctgccccacctggcctctgttccc[G/A]gccctcgggattgaaagggaagga
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells)
- ASB for transcription factors
- GLIS1_HUMAN IKZF2_HUMAN SP2_HUMAN ZN600_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GLIS1_HUMAN | -1.42 | 1.18 | 2.00 | n/a | n/a | |||
| IKZF2_HUMAN | -0.84 | 1.15 | 1.33 | n/a | n/a | |||
| SP2_HUMAN | -1.86 | 2.10 | 2.00 | -3.33 | Discordant | |||
| ZN600_HUMAN | -3.35 | 2.35 | 2.00 | n/a | n/a |
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Motif analysis
