rs6123845 chr20:59032613 C>T
- Sequence
cgggggcaagaaggccggggtgtc[C/T]ccgctcgctaaggaccactgagcc
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) HEK293 (embryonic kidney) HEK293T (embryonic kidney)
- ASB for transcription factors
- PKNX1_HUMAN BHE40_HUMAN CTCF_HUMAN FOXK2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PKNX1_HUMAN | 0.49 | 1.22 | 2.00 | n/a | No Hit | |||
| BHE40_HUMAN | 1.21 | -1.50 | 1.33 | n/a | No Hit | |||
| CTCF_HUMAN | 0.63 | 1.05 | 1.30 | n/a | No Hit | |||
| FOXK2_HUMAN | -0.47 | 1.32 | 1.88 | n/a | n/a | |||
| E4F1_HUMAN | -1.02 | 1.78 | 1.75 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood