rs613681 chr11:78759241 C>T
- Sequence
aaagcacctgtcttctccagcagt[C/T]ggcagcctccatcacacattctca
- ASB in cell types
- neural cell VCaP (prostate carcinoma) RH4 (alveolar rhabdomyosarcoma)
- ASB for transcription factors
- RAD21_HUMAN CTCF_HUMAN MYOD1_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 1.77 | -1.77 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 1.62 | -0.82 | 1.28 | 2.57 | Discordant | |||
| MYOD1_HUMAN | n/a | 2.43 | 1.50 | n/a | No Hit | |||
| SMC3_HUMAN | 1.54 | -1.79 | 1.33 | n/a | n/a |
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Motif analysis
