rs613924 chr11:66001824 C>T
- Sequence
agtacccttaagactgatggtttc[C/T]gaaagaaacactgtcgtctctagt
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) A549 (lung carcinoma)
- ASB for transcription factors
- FOXK2_HUMAN MNT_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | -0.19 | 1.28 | 1.83 | n/a | n/a | |||
| MNT_HUMAN | -0.23 | 1.37 | 1.75 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP adiponectin levels, height, infant head circumference, ldl cholesterol, tetrology of fallot, variant creutzfeldt-jakob disease
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood