rs614252 chr5:38831347 T>C
- Sequence
tgccagattccttgtctgtatgca[T/C]tggggcaccgtgacaaaaatcctt
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) T47D (invasive ductal carcinoma) breast tumor xenograft
- ASB for transcription factors
- ESR1_HUMAN GATA3_HUMAN FOXA1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 0.09 | 2.02 | 2.42 | n/a | No Hit | |||
| GATA3_HUMAN | 0.21 | 1.99 | 2.17 | n/a | No Hit | |||
| FOXA1_HUMAN | -0.16 | 1.02 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid