rs61742167 chr16:2009996 C>T
- Sequence
cggccagccccgggctcctctggg[C/T]cacgcgtgtcacgtcaacactcgc
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells) CD14+ monocytes NCI-H2171 (small cell lung carcinoma)
- ASB for transcription factors
- STAT1_HUMAN BHE40_HUMAN MYC_HUMAN AP2A_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 1.88 | 0.16 | 2.11 | n/a | No Hit | |||
| BHE40_HUMAN | -1.73 | 0.90 | 1.33 | n/a | No Hit | |||
| MYC_HUMAN | 1.22 | 0.19 | 1.28 | -3.26 | Concordant | |||
| AP2A_HUMAN | 1.59 | -1.47 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Uterus, Whole_Blood