rs617698 chr1:160193082 A>G
- Sequence
ggagactctgcctctctattcctt[A/G]tgaagttccatgctcaaatcccag
- ASB in cell types
- K562 (myelogenous leukemia) H929 (plasma cell myeloma) VCaP (prostate carcinoma)
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| K562 (myelogenous leukemia) | -0.13 | 0.70 | 2.03 | |||
| H929 (plasma cell myeloma) | 1.85 | -2.15 | 1.50 | |||
| VCaP (prostate carcinoma) | n/a | 2.17 | 2.00 |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, height, ldl cholesterol change with statins, lp-pla2 activity, personality disorders (pd) - cluster c, variant creutzfeldt-jakob disease
GTEx eQTL Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Esophagus_Muscularis, Nerve_Tibial, Ovary, Pituitary, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood