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rs61778042 chr1:22025454 G>T

Sequence
taccgcggaggctagagagacccg[G/T]cccaccccttccaacctatgcccc
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
E4F1_HUMAN EP400_HUMAN ELF4_HUMAN NRF1_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
E4F1_HUMAN 2.74 n/a 5.4·10-91.00 1.33 n/a n/a
EP400_HUMAN 2.20 n/a 1.5·10-81.00 1.33 n/a n/a
ELF4_HUMAN 3.10 n/a 2.7·10-81.00 1.33 n/a n/a
NRF1_HUMAN 2.50 -2.32 7.5·10-81.00 1.00 n/a No Hit
TAF9B_HUMAN 2.59 -2.39 1.4·10-71.00 1.00 n/a n/a
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Motif analysis

SP1_HUMAN Concordant
SP1_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Adrenal_Gland Artery_Aorta Artery_Coronary Artery_Tibial Brain_Amygdala Brain_Anterior_cingulate_cortex_BA24 Brain_Caudate_basal_ganglia Brain_Cerebellar_Hemisphere Brain_Cerebellum Brain_Cortex Brain_Frontal_Cortex_BA9 Brain_Hippocampus Brain_Hypothalamus Brain_Nucleus_accumbens_basal_ganglia Brain_Putamen_basal_ganglia Brain_Substantia_nigra Breast_Mammary_Tissue Cells_Cultured_fibroblasts Cells_EBV-transformed_lymphocytes Colon_Sigmoid Colon_Transverse Esophagus_Gastroesophageal_Junction Esophagus_Mucosa Esophagus_Muscularis Heart_Atrial_Appendage Heart_Left_Ventricle Kidney_Cortex Liver Lung Minor_Salivary_Gland Muscle_Skeletal Nerve_Tibial Ovary Pituitary Prostate Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Small_Intestine_Terminal_Ileum Spleen Stomach Testis Thyroid Uterus Vagina Whole_Blood

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