rs617870 chr17:77267005 A>G
- Sequence
ggatgcgcttgtgatgaatccagg[A/G]agggggcgctcttcgggggagccc
- ASB in cell types
- K562 (myelogenous leukemia) erythroid progenitors MCF10A (breast epithelial cells) monocyte-derived dendritic cells
- ASB for transcription factors
- CTCF_HUMAN NRF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.26 | 0.34 | 1.68 | -0.23 | Weak Concordant | |||
| NRF1_HUMAN | 1.54 | -1.91 | 2.00 | n/a | No Hit |
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Motif analysis
