rs618497 chr22:26398859 C>T
- Sequence
taaaccaccagatggcatcctcag[C/T]atgggattctcaaggaaggccttg
- ASB in cell types
- foreskin keratinocyte prostate gland MCF7 (Invasive ductal breast carcinoma) SUM159PT (pleiomorphic breast carcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.78 | 0.61 | 1.54 | n/a | No Hit | |||
| RAD21_HUMAN | 0.90 | 0.02 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Minor_Salivary_Gland, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Testis, Thyroid