rs618733 chr13:27620912 T>G
- Sequence
atccagaggaatcgcggggcgggg[T/G]ggggggaggccaggagaacaggtg
- ASB in cell types
- keratinocytes GM12878 (female B-cells) HepG2 (hepatoblastoma) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- SNAI2_HUMAN IKZF2_HUMAN BHE40_HUMAN CLOCK_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | -2.88 | 2.96 | 1.50 | n/a | No Hit | |||
| IKZF2_HUMAN | 1.37 | -1.52 | 1.33 | n/a | n/a | |||
| BHE40_HUMAN | 1.85 | -1.58 | 1.33 | n/a | No Hit | |||
| CLOCK_HUMAN | 2.75 | n/a | 3.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Whole_Blood