rs62027997 chr15:79886310 T>C
- Sequence
agttgtcacattttaagttgctga[T/C]gcaagtaaaaatccacagtacaga
- ASB in cell types
- HepG2 (hepatoblastoma) MCF7 (Invasive ductal breast carcinoma) CWR22 (prostate carcinoma)
- ASB for transcription factors
- GATA3_HUMAN MAFK_HUMAN FOXA2_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GATA3_HUMAN | n/a | 2.94 | 1.50 | n/a | No Hit | |||
| MAFK_HUMAN | -2.98 | 2.21 | 1.50 | 1.54 | Weak Concordant | |||
| FOXA2_HUMAN | -1.50 | 1.24 | 1.33 | n/a | No Hit | |||
| FOXA1_HUMAN | -0.87 | 1.11 | 1.33 | n/a | No Hit | |||
| CREB1_HUMAN | -0.25 | 1.40 | 1.33 | 3.22 | Concordant |
Items per page:
1 – 5 of 9
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Thyroid, Uterus, Vagina, Whole_Blood