rs62057219 chr17:27245530 C>T
- Sequence
agcacagctgtcatgcagccagcc[C/T]tgcagtgaggcccgcatgtctgag
- ASB in cell types
- A549 (lung carcinoma) erythroid cells K562 (myelogenous leukemia) HepG2 (hepatoblastoma)
- ASB for transcription factors
- RAD21_HUMAN CTCF_HUMAN SMC3_HUMAN SNAI2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 0.10 | 1.38 | 2.42 | n/a | n/a | |||
| CTCF_HUMAN | 0.51 | 0.87 | 1.93 | n/a | No Hit | |||
| SMC3_HUMAN | -0.66 | 1.15 | 2.83 | n/a | n/a | |||
| SNAI2_HUMAN | -2.39 | 1.96 | 1.50 | n/a | No Hit |
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