rs620833 chr7:43825634 C>G
- Sequence
tgttgggggttacaagtggcgccc[C/G]gaacagcaacaggatcgggtgctc
- ASB in cell types
- HEK293 (embryonic kidney)
- ASB for transcription factors
- PRDM6_HUMAN SCRT1_HUMAN FEZF1_HUMAN SCRT2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PRDM6_HUMAN | n/a | 2.83 | 1.50 | n/a | No Hit | |||
| SCRT1_HUMAN | -2.39 | 2.22 | 1.33 | n/a | n/a | |||
| FEZF1_HUMAN | -2.62 | 2.19 | 1.50 | n/a | No Hit | |||
| SCRT2_HUMAN | n/a | 2.62 | 2.00 | n/a | n/a | |||
| HIC1_HUMAN | -2.87 | 2.16 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP adiponectin levels, advanced age-related macular degeneration, advanced age-related macular degeneration (geographic atrophy), triglycerides change with statins
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood