rs62088300 chr18:755637 C>T
- Sequence
cttgtagtggggatttatcttttg[C/T]acccactggctgttaatgaggaca
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- ARI1B_HUMAN TAL1_HUMAN NCOR1_HUMAN HTF4_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ARI1B_HUMAN | 0.74 | n/a | 1.33 | n/a | n/a | |||
| TAL1_HUMAN | 0.72 | 0.05 | 1.37 | -0.65 | Weak Concordant | |||
| NCOR1_HUMAN | 0.97 | -0.76 | 1.33 | n/a | n/a | |||
| HTF4_HUMAN | 1.11 | -1.81 | 1.33 | n/a | No Hit | |||
| KDM1A_HUMAN | 0.63 | 0.25 | 1.39 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Nerve_Tibial, Pancreas, Skin_Sun_Exposed_Lower_leg