rs62089220 chr17:75588588 C>A
- Sequence
gagcggcagccagcgcggcacagc[C/A]cgggagctgcggcccacgccggag
- ASB in cell types
- GM12878 (female B-cells) RWPE2
- ASB for transcription factors
- IKZF1_HUMAN CTCF_HUMAN IKZF2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | -0.53 | 1.84 | 1.33 | n/a | No Hit | |||
| CTCF_HUMAN | 0.51 | 1.00 | 1.34 | n/a | No Hit | |||
| IKZF2_HUMAN | -0.32 | 1.99 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Whole_Blood