rs62093923 chr18:59057393 C>T
- Sequence
aaacgcttcccagaggaaggagcg[C/T]ccccatgtggctgtactgtgtttc
- ASB in cell types
- MCF10A (breast epithelial cells) HEK293 (embryonic kidney) A549 (lung carcinoma) RH4 (alveolar rhabdomyosarcoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.27 | -0.60 | 1.58 | -3.43 | Concordant | |||
| RAD21_HUMAN | 2.07 | -2.32 | 1.33 | n/a | n/a |
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Motif analysis
