rs62129340 chr19:4343188 T>C
- Sequence
ggacctgagtttctcccctggtcc[T/C]aaaggccgaggcctctgagttcct
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) LNCaP C4-2B (prostate carcinoma) foreskin keratinocyte
- ASB for transcription factors
- CTCF_HUMAN NRF1_HUMAN P53_HUMAN MTA1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.97 | 0.23 | 1.41 | n/a | No Hit | |||
| NRF1_HUMAN | 2.33 | n/a | 1.33 | n/a | No Hit | |||
| P53_HUMAN | 2.38 | -2.67 | 1.50 | n/a | No Hit | |||
| MTA1_HUMAN | 2.12 | -2.17 | 1.33 | n/a | n/a | |||
| CREB1_HUMAN | 1.32 | -1.00 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid