rs62158853 chr2:113111989 C>T
- Sequence
gacagttttaggcctgaggcaacc[C/T]cagactttgggttgttgtttgctg
- ASB in cell types
- liver HepG2 (hepatoblastoma) LHSAR (prostate epithelial cells)
- ASB for transcription factors
- RXRA_HUMAN SP1_HUMAN HNF4A_HUMAN CEBPA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RXRA_HUMAN | -0.20 | 2.37 | 1.33 | n/a | No Hit | |||
| SP1_HUMAN | 0.02 | 2.60 | 1.33 | n/a | No Hit | |||
| HNF4A_HUMAN | -0.72 | 1.79 | 1.33 | n/a | No Hit | |||
| CEBPA_HUMAN | 0.63 | 2.52 | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 1.59 | n/a | 1.50 | n/a | No Hit |
Items per page:
1 – 5 of 5
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood