rs62179504 chr2:200303032 T>C
- Sequence
ccacgcaccttgatgttgcagcac[T/C]aggaagaaaagaatgcggtgactg
- ASB in cell types
- HepG2 (hepatoblastoma) GM12878 (female B-cells)
- ASB for transcription factors
- FOXA2_HUMAN CREB1_HUMAN NC2A_HUMAN FOXK2_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA2_HUMAN | 2.56 | n/a | 2.00 | n/a | No Hit | |||
| CREB1_HUMAN | 1.48 | -0.06 | 2.00 | n/a | No Hit | |||
| NC2A_HUMAN | 2.36 | -3.32 | 2.00 | n/a | n/a | |||
| FOXK2_HUMAN | 1.52 | -0.30 | 1.75 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid