rs622061 chr18:11995403 A>G
- Sequence
ggcagaacttggtgctgaggccac[A/G]cgtatccgcgtggtgtgcagattg
- ASB in cell types
- foreskin keratinocyte cranial neural crest cells HEK293 (embryonic kidney)
- ASB for transcription factors
- CTCF_HUMAN COT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.97 | 0.45 | 1.33 | n/a | No Hit | |||
| COT1_HUMAN | -3.21 | 2.38 | 2.00 | n/a | No Hit |
Items per page:
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Spleen, Stomach, Testis, Thyroid