rs62214331 chr21:45555013 C>T
- Sequence
gcccaggagcacgtccaggttatg[C/T]gtggggccgccctgtgcgcgcgcc
- ASB in cell types
- K562 (myelogenous leukemia) neural cell ovary adrenal gland
- ASB for transcription factors
- CTCF_HUMAN KDM1A_HUMAN PF21A_HUMAN HDAC2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.62 | 0.39 | 1.29 | n/a | No Hit | |||
| KDM1A_HUMAN | 1.83 | n/a | 1.33 | n/a | n/a | |||
| PF21A_HUMAN | 1.75 | -2.03 | 1.33 | n/a | n/a | |||
| HDAC2_HUMAN | 1.88 | -1.46 | 1.33 | n/a | n/a | |||
| SMC3_HUMAN | 1.09 | -1.09 | 1.00 | n/a | n/a |
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Motif analysis
