rs62214332 chr21:45555018 G>A
- Sequence
ggagcacgtccaggttatgcgtgg[G/A]gccgccctgtgcgcgcgcctggag
- ASB in cell types
- K562 (myelogenous leukemia) neural cell ovary liver
- ASB for transcription factors
- CTCF_HUMAN KDM1A_HUMAN HDAC2_HUMAN PF21A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.64 | 0.41 | 1.30 | -0.47 | Weak Concordant | |||
| KDM1A_HUMAN | 1.91 | n/a | 1.33 | n/a | n/a | |||
| HDAC2_HUMAN | 2.11 | -1.50 | 1.33 | n/a | n/a | |||
| PF21A_HUMAN | 1.86 | -2.12 | 1.33 | n/a | n/a | |||
| SMC3_HUMAN | 1.06 | -1.06 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Nerve_Tibial, Pancreas, Pituitary, Whole_Blood