rs62287061 chr3:195271511 A>G
- Sequence
aatctctgcaccttttttccctca[A/G]tttcttggaggctttaagccgtct
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells) foreskin keratinocyte HCT-116 (colon carcinoma)
- ASB for transcription factors
- FOXK2_HUMAN ZBT17_HUMAN ESR1_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 2.78 | -3.31 | 1.33 | n/a | n/a | |||
| ZBT17_HUMAN | 2.07 | -2.48 | 1.50 | 0.45 | Weak Discordant | |||
| ESR1_HUMAN | 1.83 | n/a | 2.50 | n/a | No Hit | |||
| CTCF_HUMAN | 0.52 | 0.95 | 1.37 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Breast_Mammary_Tissue, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Minor_Salivary_Gland, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid, Vagina