rs62384216 chr5:140639312 G>A
- Sequence
ggcagagcgacgcctctggctctg[G/A]tctagtggtgcagcgtctctagcc
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma) neutrophils VCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN MNT_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.38 | 0.19 | 1.81 | n/a | No Hit | |||
| RAD21_HUMAN | 1.03 | -0.20 | 1.96 | n/a | n/a | |||
| MNT_HUMAN | 1.82 | -0.84 | 2.00 | n/a | n/a | |||
| FOXK2_HUMAN | 1.62 | -0.43 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Cerebellum, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood