rs623853 chr12:69360050 G>A
- Sequence
cagtgcccggaccgcccctcttcc[G/A]gggtggctctcccgcctcggttcc
- ASB in cell types
- HEK293 (embryonic kidney) HepG2 (hepatoblastoma) K562 (myelogenous leukemia) GM12878 (female B-cells)
- ASB for transcription factors
- ETV5_HUMAN GABP1_HUMAN FOXK2_HUMAN E4F1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ETV5_HUMAN | 2.88 | -3.76 | 1.50 | n/a | No Hit | |||
| GABP1_HUMAN | 3.09 | -1.63 | 1.67 | n/a | n/a | |||
| FOXK2_HUMAN | 2.13 | 0.07 | 1.33 | n/a | n/a | |||
| E4F1_HUMAN | 2.44 | n/a | 2.00 | n/a | n/a | |||
| THA11_HUMAN | 1.74 | n/a | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood