rs62440028 chr7:6857958 C>T
- Sequence
gctaagcagaagtaggagcaggtt[C/T]gccaggctgtgtggatgcaggtgg
- ASB in cell types
- foreskin keratinocyte GEN2.2 (blastic plasmacytoid dendritic cell neoplasm) lymphoblastoid cells human cardiac myocytes
- ASB for transcription factors
- CTCF_HUMAN ITF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.24 | -0.45 | 1.51 | n/a | No Hit | |||
| ITF2_HUMAN | 2.02 | -2.39 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Left_Ventricle, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Vagina