rs62491441 chr7:140175455 C>G
- Sequence
acagtcaccatatctgctattact[C/G]gtgagcgtgctctcgccaagagac
- ASB in cell types
- 22RV1 (prostate carcinoma) CD14+ monocytes breast tumor tissue
- ASB for transcription factors
- STAT1_HUMAN ESR1_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.27 | n/a | 2.50 | n/a | No Hit | |||
| ESR1_HUMAN | 1.43 | n/a | 2.50 | 4.12 | Discordant | |||
| CTCF_HUMAN | 1.09 | 0.30 | 1.48 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Aorta, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Colon_Transverse, Lung, Nerve_Tibial, Pancreas, Pituitary, Spleen, Testis, Thyroid