rs6269 chr22:19962429 A>G
- Sequence
catttctgaaccttgcccctctgc[A/G]aacacaagggggcgatggtggcac
- ASB in cell types
- HEK293 (embryonic kidney) thoracic aorta erythroid cells esophagus muscularis mucosa
- ASB for transcription factors
- CTCF_HUMAN PATZ1_HUMAN ZFHX2_HUMAN SP2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.30 | 1.00 | 1.43 | 1.56 | Weak Concordant | |||
| PATZ1_HUMAN | n/a | 2.58 | 2.00 | n/a | No Hit | |||
| ZFHX2_HUMAN | n/a | 2.27 | 2.00 | n/a | n/a | |||
| SP2_HUMAN | -2.88 | 2.17 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Esophagus_Mucosa, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid