rs628311 chr6:142147129 C>A
- Sequence
ttctaaccgccgagagccaagcac[C/A]ctgaggttgtcccagctggggatc
- ASB in cell types
- Th1-cells A549 (lung carcinoma) HCT-116 (colon carcinoma)
- ASB for transcription factors
- CTCF_HUMAN KDM5B_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.77 | 0.43 | 1.34 | n/a | No Hit | |||
| KDM5B_HUMAN | 1.34 | -0.54 | 1.46 | n/a | n/a | |||
| RAD21_HUMAN | 0.27 | 0.73 | 1.24 | n/a | n/a |
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