rs628563 chr1:194102788 G>A
- Sequence
ttgggttgagctcttcaagctcca[G/A]gccagtaggtggcacttactggta
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) SK-N-SH (neuroblastoma) T47D (invasive ductal carcinoma)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.56 | 0.54 | 1.76 | -1.74 | Weak Concordant |
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Motif analysis
