rs629343 chr11:86100096 A>G
- Sequence
tctctaagatacgttgacagacct[A/G]tttgtcatgtctctttagtctgtg
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) HepG2 (hepatoblastoma)
- ASB for transcription factors
- MEIS2_HUMAN ERR1_HUMAN CTBP1_HUMAN CREB1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MEIS2_HUMAN | 3.32 | n/a | 2.00 | n/a | No Hit | |||
| ERR1_HUMAN | 2.37 | 2.23 | 1.67 | n/a | No Hit | |||
| CTBP1_HUMAN | 0.87 | 2.70 | 1.67 | n/a | n/a | |||
| CREB1_HUMAN | 0.08 | 1.87 | 1.44 | n/a | No Hit | |||
| MITF_HUMAN | 2.41 | -3.55 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP 2 hour glucose, alzheimers disease with psychotic symptoms (alzheimers disease with psychotic symptoms v. controls), height
GTEx eQTL Adipose_Subcutaneous, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood