rs632640 chr11:66013771 C>G
- Sequence
aatattctcagaggtcaggggtgg[C/G]ggcagactcacagaggaggggcga
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- COT1_HUMAN NR2C1_HUMAN RING2_HUMAN ARI1B_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| COT1_HUMAN | 2.77 | n/a | 2.00 | 5.56 | Discordant | |||
| NR2C1_HUMAN | 2.31 | -1.07 | 2.00 | n/a | No Hit | |||
| RING2_HUMAN | 2.29 | -2.11 | 2.00 | n/a | n/a | |||
| ARI1B_HUMAN | 2.32 | -3.21 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid