rs635534 chr1:234642066 G>A
- Sequence
gcactttgggaggccgaggtgggc[G/A]gatcacgagatcaggagttcaaga
- ASB in cell types
- GM12878 (female B-cells)
- ASB for transcription factors
- IKZF1_HUMAN IKZF2_HUMAN MTA2_HUMAN RAD51_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | 2.51 | -2.78 | 1.33 | n/a | No Hit | |||
| IKZF2_HUMAN | 2.44 | -1.96 | 1.33 | n/a | n/a | |||
| MTA2_HUMAN | 2.60 | -2.84 | 1.33 | n/a | n/a | |||
| RAD51_HUMAN | 2.66 | -3.32 | 1.33 | n/a | n/a | |||
| SKIL_HUMAN | 2.16 | -2.25 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Lung, Muscle_Skeletal, Pituitary, Testis