rs638050 chr19:48872419 T>C
- Sequence
aaagcctagtggccattgtgttcg[T/C]tgctcttatcggttcccatcccag
- ASB in cell types
- HEK293 (embryonic kidney) HeLa S3 (cervical adenocarcinoma) CD14+ monocytes HAEC (human aortic endothelial cells)
- ASB for transcription factors
- CTCF_HUMAN STAT1_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.71 | 0.34 | 1.36 | n/a | No Hit | |||
| STAT1_HUMAN | 1.23 | 0.43 | 2.21 | n/a | No Hit | |||
| FOXK2_HUMAN | 0.95 | -1.24 | 1.33 | n/a | n/a |
Items per page:
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GRASP arthritis including non-rheumatoid, late onset alzheimers disease, ldl cholesterol, partial epilepsy, spine bone mineral density (bmd), waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Thyroid, Whole_Blood