rs639403 chr11:30230078 C>T
- Sequence
agagtacaaaccagagcccttaca[C/T]tggtctacaagttccaacatttga
- ASB in cell types
- VCaP (prostate carcinoma) LNCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.12 | 0.36 | 1.67 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP aortic valve calcium, hdl cholesterol change with statins, height, paternal transmission distortion, total cholesterol change with statins, transmission distortion
GTEx eQTL Adipose_Subcutaneous, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Nerve_Tibial, Ovary, Pancreas, Pituitary, Testis, Thyroid, Whole_Blood