rs640000 chr19:39435961 C>T
- Sequence
caaccggaaaaggaaagctagggg[C/T]caccctggccgcttttcagggtct
- ASB in cell types
- A549 (lung carcinoma) GM12878 (female B-cells) germinal center B-cells liver
- ASB for transcription factors
- JUN_HUMAN GABPA_HUMAN CTCF_HUMAN BCL3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | -0.19 | 1.36 | 1.68 | n/a | No Hit | |||
| GABPA_HUMAN | 1.13 | 0.40 | 1.54 | n/a | No Hit | |||
| CTCF_HUMAN | 0.30 | 0.72 | 1.30 | 0.66 | Weak Concordant | |||
| BCL3_HUMAN | -0.42 | 1.17 | 1.57 | n/a | n/a | |||
| CREB1_HUMAN | 0.76 | 1.21 | 1.33 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood