ADASTRA v1.6.10
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rs640617
chr18:3603184
T
>
A
Sequence
gcagttgctgataaccttgtcagg[T/A]caccagataaaggcaagtcttgtc
ASB in cell types
CD34+ hematopoietic stem cells-derived proerythroblasts
primary endothelial colony-forming cells
ASB for transcription factors
COT1_HUMAN
NR2F6_HUMAN
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Color scale
-log10 FDR of Ref (
T
) ASB
-log10 FDR of Alt (
A
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
COT1_HUMAN
0.87
0.07
1.2·10
-10
0.73
1.33
n/a
No Hit
NR2F6_HUMAN
2.30
-2.59
4.7·10
-4
1.00
1.50
n/a
n/a
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5
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Motif analysis
No data available
Genetic associations
GRASP
total cholesterol
GTEx eQTL
Adipose_Subcutaneous
,
Cells_Cultured_fibroblasts
,
Lung
,
Muscle_Skeletal
,
Nerve_Tibial
,
Pituitary
,
Thyroid
,
Whole_Blood
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)