rs640822 chr11:69515322 C>T
- Sequence
gtatgtggcacctcccgctcccca[C/T]atggtgacttcaggcagctccacc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) T47D (invasive ductal carcinoma)
- ASB for transcription factors
- ESR1_HUMAN FOXA1_HUMAN ZFX_HUMAN MNT_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 0.93 | 0.20 | 1.46 | n/a | No Hit | |||
| FOXA1_HUMAN | 0.96 | 0.09 | 1.47 | n/a | No Hit | |||
| ZFX_HUMAN | 1.12 | -0.40 | 1.31 | n/a | No Hit | |||
| MNT_HUMAN | 1.68 | -1.31 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), birth weight, multiple myeloma