rs6433890 chr2:181104653 T>A
- Sequence
cgctctcccttccttccctcttct[T/A]tccttctatttggtttctatcaat
- ASB in cell types
- A549 (lung carcinoma) GM12878 (female B-cells) foreskin keratinocyte HepG2 (hepatoblastoma)
- ASB for transcription factors
- SMC3_HUMAN RAD21_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMC3_HUMAN | 1.41 | 0.02 | 1.83 | n/a | n/a | |||
| RAD21_HUMAN | 1.28 | 0.40 | 1.83 | n/a | n/a | |||
| FOXK2_HUMAN | -0.05 | 2.02 | 1.63 | n/a | n/a |
Items per page:
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Whole_Blood