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rs644377 chr6:152897549 A>T

Sequence
ccttttcctatatgcatctgtcca[A/T]cagcaagtgaagacaggaattgcc
ASB for transcription factors
CTCF_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN -0.38 1.15 1.004.1·10-3 1.67 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP fasting blood glucose ldl cholesterol major depressive disorder major depressive disorder (broad definition) major depressive disorder (broad definition) (females) major depressive disorder (narrow definition) major depressive disorder (narrow definition) (females) recurrent early onset major depressive disorder recurrent early onset major depressive disorder (females) total cholesterol
GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Adrenal_Gland Artery_Aorta Artery_Coronary Artery_Tibial Brain_Cerebellar_Hemisphere Brain_Cerebellum Brain_Cortex Brain_Hypothalamus Brain_Nucleus_accumbens_basal_ganglia Breast_Mammary_Tissue Cells_Cultured_fibroblasts Colon_Sigmoid Colon_Transverse Esophagus_Gastroesophageal_Junction Esophagus_Mucosa Esophagus_Muscularis Heart_Atrial_Appendage Heart_Left_Ventricle Lung Minor_Salivary_Gland Muscle_Skeletal Nerve_Tibial Ovary Pancreas Pituitary Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Small_Intestine_Terminal_Ileum Spleen Stomach Thyroid Vagina Whole_Blood

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