rs644428 chr1:97272148 C>T
- Sequence
aaataaaactcacagtcttgttta[C/T]tttttctctactttttctccaact
- ASB in cell types
- pancreatic ductal adenocarcinoma LNCaP (prostate carcinoma) VCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.79 | -1.04 | 1.59 | -2.92 | Concordant |
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Motif analysis
Genetic associations
GRASP college completion, rheumatoid arthritis, combined control dataset, gender differentiated, total cholesterol