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rs644878 chr12:52534826 T>C

Sequence
ggtacttaccccctttactcttcc[T/C]tctttattttgcattcagcccagg
ASB in cell types
LNCaP C4-2B (prostate carcinoma) LNCaP (prostate carcinoma)
ASB for transcription factors
CTCF_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN n/a 2.45 1.002.1·10-7 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Esophagus_Mucosa Pancreas Skin_Sun_Exposed_Lower_leg Whole_Blood

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