rs645903 chr11:60854423 G>A
- Sequence
cccacatggggctctggaggccca[G/A]tggggccaaaagatctctcccttc
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- ARI1B_HUMAN REQU_HUMAN NCOR1_HUMAN HDAC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ARI1B_HUMAN | n/a | 2.92 | 2.00 | n/a | n/a | |||
| REQU_HUMAN | -1.67 | 2.51 | 2.00 | n/a | n/a | |||
| NCOR1_HUMAN | -3.68 | 2.46 | 2.00 | n/a | n/a | |||
| HDAC1_HUMAN | -1.27 | 1.94 | 2.00 | n/a | n/a | |||
| SMCA4_HUMAN | -0.77 | 2.26 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Brain_Hippocampus, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis