rs6460173 chr7:64666122 G>A
- Sequence
tggagcggacaggacggcttccgg[G/A]atttggcggggcctttgtctctgg
- ASB in cell types
- VCaP (prostate carcinoma) ICN12 (primary pre-B acute lymphomablastic leukemia)
- ASB for transcription factors
- E4F1_HUMAN ELF1_HUMAN ERG_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| E4F1_HUMAN | 0.83 | -1.66 | 1.33 | n/a | n/a | |||
| ELF1_HUMAN | 0.81 | -1.64 | 1.33 | -2.08 | Concordant | |||
| ERG_HUMAN | -0.96 | 1.41 | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid, Whole_Blood