rs6469696 chr8:117520725 A>G
- Sequence
acgttttctgacgtgttacgtcac[A/G]gtgggcggaagtcgcggccgctgt
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) VCaP (prostate carcinoma) HCT-116 (colon carcinoma)
- ASB for transcription factors
- ATF3_HUMAN ERG_HUMAN EGR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF3_HUMAN | n/a | 1.91 | 2.00 | -0.39 | Weak Discordant | |||
| ERG_HUMAN | -0.17 | 1.06 | 1.73 | n/a | No Hit | |||
| EGR1_HUMAN | 1.10 | 1.76 | 2.00 | -2.34 | Discordant |
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Motif analysis
