rs647706 chr6:140775672 A>T
- Sequence
tagaatgcctctaacatatattct[A/T]ccaatctgatttcttagctattat
- ASB in cell types
- LNCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | -0.17 | 0.77 | 1.44 | n/a | No Hit | |||
| ANDR_HUMAN | -0.93 | 1.25 | 1.33 | n/a | No Hit |
Items per page:
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GRASP cerebral malaria, hdl cholesterol, ldl cholesterol change with statins, malaria, systolic blood pressure (sbp)
GTEx eQTL Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Hippocampus, Brain_Hypothalamus, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Cells_Cultured_fibroblasts, Nerve_Tibial, Pituitary, Spleen