rs648651 chr19:55675117 T>C
- Sequence
caacggggcccagcgcgccggaag[T/C]gatgccttccaggttggcttggct
- ASB in cell types
- K562 (myelogenous leukemia) breast tumor tissue
- ASB for transcription factors
- MNT_HUMAN ESR1_HUMAN HDAC1_HUMAN KDM5B_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MNT_HUMAN | -1.77 | 1.92 | 2.00 | n/a | n/a | |||
| ESR1_HUMAN | n/a | 2.18 | 2.50 | n/a | No Hit | |||
| HDAC1_HUMAN | -0.10 | 1.80 | 2.00 | n/a | n/a | |||
| KDM5B_HUMAN | 1.75 | -1.15 | 2.00 | n/a | n/a | |||
| RFOX2_HUMAN | -1.95 | 2.18 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Cells_Cultured_fibroblasts, Lung, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg